PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g053630.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 571aa    MW: 64752 Da    PI: 4.7811
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g053630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13316361555
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     + ++ErrRR+++N+++  Lr+l+P+      +Kl+ a+iL  A++Y+k+Lq
  Csa19g053630.1 316 NLMAERRRRKKLNDRLYALRSLVPTI-----TKLDRASILGDAINYVKELQ 361
                     5589*********************7.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.2E-1810148IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.704311360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-14313363No hitNo description
SuperFamilySSF474594.71E-18314376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-11316361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-16317366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17318374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MESNMQNLLE KLRPLVGERD WDYCVLWRLN EDQRFVKWIG CCCGGTELIA ENGTEEFSFG  60
GCRDVMFHHP RTKSCESLSH LPSSIPLDSG IYAETLLTNQ TGWLSESSEP TFMQETICTR  120
VLIPISGGLV ELFATRHVAE DQNVVDFVMG HCNMLMDETV TINMMAADEV ESKPYGMLSG  180
ESHQKGSKDE DIMNLPSSYD ISSDQIRLNF LPQMSDYEAQ QHLKMKSDYH QQALGYLPEN  240
IIKEMMGLNP FNTMADDGIP VMGEPSLLVN EQQVANDKEM NENGRLDSGS DCSDQIDDED  300
DPKYKKKSGK GSQAKNLMAE RRRRKKLNDR LYALRSLVPT ITKLDRASIL GDAINYVKEL  360
QNEAKELQDE LEENSETEDG SNRQQGGMSL NGTVVTGFHP GLSCNSNVPN VKQDVDLDNS  420
NDKGQEMEPQ VDVAQLDGRE FFVKVICEYK SGGFTRLMEA LDSLGLEVTN ANTTRYLSLV  480
SNVFKVEKNH NEMVQAEHVR NSLLEITRNT SRGWHDDQMA TGSMQNEKNE VDFQHYDDHQ  540
HHHHPFDHQM NQSAHHHHHH QHINPYHNNQ *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304325KKKSGKGSQAKNLMAERRRRKK
2319326ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885650.0AF488565.1 Arabidopsis thaliana clone bHLH021 putative bHLH transcription factor mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010489298.10.0PREDICTED: transcription factor ABORTED MICROSPORES-like isoform X1
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLR0I4J30.0R0I4J3_9BRAS; Uncharacterized protein
STRINGAT2G16910.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein